Trajanoski Zlatko, Univ.Prof. Dipl.-Ing.Dr.techn.

University / Clinic:
Institute: Division of Bioinformatics, Biocenter, IMU
 
Research Area:

Email: Zlatko.Trajanoski@i-med.ac.at
Web:  


Research Topic:


Project:
  Inferring intratumoral immune landscapes using quantitative image analysis and next-generation sequencing data
details ...

Selected publications:
 
  Charoentong P, Finotello F, Angelova M, Mayer C, Efremova M, Rieder D, Hackl H, Trajanoski Z
Pan-cancer Immunogenomic Analyses Reveal Genotype-Immunophenotype Relationships and Predictors of Response to Checkpoint Blockade
Cell Rep. 2017 Jan 3;18(1):248-262. doi: 10.1016/j.celrep.2016.12.019.

  Sebald J, Willi M, Schoberleitner I, Krogsdam A, Orth-Höller D, Trajanoski Z, Lusser A
Impact of the Chromatin Remodeling Factor CHD1 on Gut Microbiome Composition of Drosophila melanogaster
PLoS One. 2016 Apr 19;11(4):e0153476. doi: 10.1371/journal.pone.0153476. eCollection 2016.

  Willi M, Yoo KH, Wang C, Trajanoski Z, Hennighausen L.
Differential cytokine sensitivities of STAT5-dependent enhancers rely on Stat5 autoregulation
Nucleic Acids Res. 2016 Dec 1;44(21):10277-10291.

  Lammirato A, Patsch K, Feiereisen F, Maly K, Nofziger C, Paulmichl M, Hackl H, Trajanoski Z, Valovka T, Huber L, Vietor I
TIS7 induces transcriptional cascade of methylosome components required for muscle differentiation
BMC Biol. 2016 Oct 25;14(1):95.

  Pasqualini L, Bu H, Puhr M, Narisu N, Rainer J, Schlick B, Schäfer G, Angelova M, Trajanoski Z, Börno S, Schweiger M, Fuchsberger C, Klocker H
miR-22 and miR-29a Are Members of the Androgen Receptor Cistrome Modulating LAMC1 and Mcl-1 in Prostate Cancer.
Mol Endocrinol. 2015 Jul;29(7):1037-54.

  Angelova M, Charoentong P, Hackl H, Fischer M, Snajder R, Krogsdam A, Waldner M, Bindea G, Mlecnik B, Galon J, Trajanoski Z
Characterization of the immunophenotypes and antigenomes of colorectal cancers reveals distinct tumor escape mechanisms and novel targets for immunotherapy
Genome Biol. 2015 Mar 31;16(1):64.

  Müller M, Schmidt O, Angelova M, Faserl K, Weys S, Kremser L, Pfaffenwimmer T, Dalik T, Kraft C, Trajanoski Z, Lindner H, Teis D
The coordinated action of the MVB pathway and autophagy ensures cell survival during starvation.
Elife. 2015 Apr 22;4:e07736.

  Mlecnik B, Bindea G, Angell HK, Maby P, Angelova M, Tougeron D, Church SE, Lafontaine L, Fischer M, Fredriksen T, Sasso M, Bilocq AM, Kirilovsky A, Obenauf AC, Hamieh M, Berger A, Bruneval P, Tuech J, Sabourin J, Le Pessot F, Mauillon J, Rafii A, Laurent-Puig P, Speicher M, Trajanoski Z, Michel P, Sesboüe R, Frebourg T, Pagès F, Valge-Archer V, Latouche J, Galon J
Integrative Analyses of Colorectal Cancer Show Immunoscore Is a Stronger Predictor of Patient Survival Than Microsatellite Instability
Immunity. 2016 Mar 15;44(3):698-711. doi: 10.1016/j.immuni.2016.02.025.

  Tymoszuk P, Charoentong P, Hackl H, Spilka R, Müller-Holzner E, Trajanoski Z, Obrist P, Revillion F, Peyrat J, Fiegl H, Doppler W
High STAT1 mRNA levels but not its tyrosine phosphorylation are associated with macrophage infiltration and bad prognosis in breast cancer.
BMC Cancer. 2014 Apr 12;14:257.

  Pabinger S, Dander A, Fischer M, Snajder R, Sperk M, Efremova M, Krabichler B, Speicher M, Zschocke J, Trajanoski Z
A survey of tools for variant analysis of next-generation genome sequencing data
Brief Bioinform. 2013 Jan 21

  Gallasch R, Efremova M, Charoentong P, Hackl H, Trajanoski Z
Mathematical models for translational and clinical oncology.
J Clin Bioinforma. 2013 Nov 7;3(1):23.

  Charoentong P, Angelova M, Efremova M, Gallasch R, Hackl H, Galon J, Trajanoski Z
Bioinformatics for cancer immunology and immunotherapy.
Cancer Immunol Immunother. 2012 Nov;61(11):1885-903.

  Rainer J, Ploner C, Jesacher S, Ploner A, Eduardoff M, Mansha M, Wasim M, Panzer-Grümayer R, Trajanoski Z, Niederegger H, Kofler R
Glucocorticoid-regulated microRNAs and mirtrons in acute lymphoblastic leukemia.
Leukemia. 2009 Apr;23(4):746-52. Epub 2009 Jan 15.

  Rainer J, Ploner C, Jesacher S, Ploner A, Eduardoff M, Mansha M, Wasim M, Panzer-Grümayer R, Trajanoski Z, Niederegger H, Kofler R
Glucocorticoid regulated microRNAs and mirtrons in acute lymphoblastic leukemia.
Leukemia 23:746-752.

  Rainer J, Ploner C, Jesacher S, Ploner A, Eduardoff M, Mansha M, Wasim M, Panzer-Grümayer R, Trajanoski Z, Niederegger H, Kofler R
Glucocorticoid-regulated microRNAs and mirtrons in acute lymphoblastic leukemia.
Leukemia. 2009 Apr;23(4):746-52.

  Rainer J, Sanchez-Cabo F, Stocker G, Sturn A, Trajanoski Z
CARMAweb: comprehensive R- and bioconductor-based web service for microarray data analysis.
Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W498-503.

  Rainer J, Sanchez-Cabo F, Stocker G, Sturn A, Trajanoski Z
CARMAweb: comprehensive R- and bioconductor-based web service for microarray data analysis.
Nucleic Acids Res. 2006 34(Web Server Issue):W498-503.

  Sturn A, Mlecnik B, Pieler R, Rainer J, Truskaller T, Trajanoski Z
Client-server environment for high-performance gene expression data analysis.
Bioinformatics. 2003 Apr 12;19(6):772-3.